| jg.plotMA | R Documentation |
This function plots both the control and experimental data on an MA plot. It also allows for the user to provide a normalisation coefficient for the data.
jg.plotMA(jg.experimentPeakset, jg.controlPeakset, jg.untreatedNames, jg.treatedNames, jg.coefficient)
jg.experimentPeakset |
is the peakset of the experimental data extracted from a DiffBind ojbect with jg.dbaGetPeakset |
jg.controlPeakset |
is the peakset of the control data extracted from a DiffBind ojbect with jg.dbaGetPeakset |
jg.untreatedNames |
is a list of sample names for the control or untreated conditions |
jg.treatedNames |
is a list of sample samples for the treated conditions |
jg.coefficient |
is a normalisation coefficient for the data that can be generated via the pipeline. Can be set to 1 to view before normalisation. |