AddSBSClassR Documentation

Add SBS mutation class to an annotated SBS VCF

Description

Add SBS mutation class to an annotated SBS VCF

Usage

AddSBSClass(vcf)

Arguments

vcf

An in-memory VCF file annotated with sequence context and transcript information by function AnnotateSBSVCF. It must *not* contain indels and must *not* contain DBS (double base substitutions), or triplet base substitutions etc., even if encoded as neighboring SBS.

Value

The original vcf with three additional columns SBS96.class, SBS192.class and SBS1536.class added.