| PermutationCountSummary | R Documentation |
Return the number of significant analytes and the number of permutations in which each analyte is significant. If plot = TRUE, show a box plot of number of significant analytes over permutations, overlaid with the number of significant analytes in the original data.
PermutationCountSummary(inputResults, permResults, plot)
inputResults |
Data frame with model results (output of ProcessResults()) |
permResults |
An object of type PermutationResults (output of PermuteIntLIM()) |
plot |
Whether or not to show the boxplot. Default is TRUE. |
A data frame that includes, for each permutation, the number of significant pairs and the number of unique analytes of each analyte type within those pairs