| PermutationPairSummary | R Documentation |
Return the number of significant analytes / pairs per permutation and the number of permutations in which each analyte is significant. If plot = TRUE, show a box plot of number of significant analytes over permutations, overlaid with the number of significant analytes in the original data.
PermutationPairSummary(inputResults, permResults, plot)
inputResults |
Data frame with model results (output of ProcessResults()) |
permResults |
An object of type PermutationResults (output of PermuteIntLIM()) |
plot |
Whether or not to show the boxplot. Default is TRUE. |
A data frame that includes each significant pair from the unpermuted data and the number of times that pair was significant in the permuted data.