R: Sort assembly motifs

sort_motifs

R Documentation

Sort assembly motifs

Sort assembly motifs, by decreasing or increasing mean performances

sort_motifs(fobs, assMotif, assNames,
            pvalue  = fpvalue(),
            opt.dec = TRUE   )

`fobs`	numeric vector. The vector contains assemblage performances.
`assMotif`	an integer vector of `length(fobs)`. The vector contains the labels of each assemblages. The labels are used to sorted the assemblages that share a same assembly motif.
`assNames`	a vector of strings of `length(fobs)`. The vector contains the names of each assemblage.
`pvalue`	a probability, used as threshold in the variance analysis. Then `pvalue` must be higher than `0` and lower than `1`. Groups significantly different (at a p-value < `pvalue`) are then indicated by differents letters on the right of boxplots.
`opt.dec`	a logical. If `opt.dec = TRUE`, assembly motifs are sorted by decreasing mean performances. If `opt.dec = FALSE`, assembly motifs are sorted by increasing mean performances.

None.

Return a table containing statistical properties of assembly motifs, sorted by increasing or decreasing mean performances.