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cytometree  

Automated Cytometry Gating and Annotation
View on CRAN: Click here


Download and install cytometree package within the R console
Install from CRAN:
install.packages("cytometree")

Install from Github:
library("remotes")
install_github("cran/cytometree")

Install by package version:
library("remotes")
install_version("cytometree", "2.0.6")



Attach the package and use:
library("cytometree")
Maintained by
Boris P Hejblum
[Scholar Profile | Author Map]
All associated links for this package
First Published: 2017-06-26
Latest Update: 2025-07-24
Description:
Given the hypothesis of a bi-modal distribution of cells for each marker, the algorithm constructs a binary tree, the nodes of which are subpopulations of cells. At each node, observed cells and markers are modeled by both a family of normal distributions and a family of bi-modal normal mixture distributions. Splitting is done according to a normalized difference of AIC between the two families. Method is detailed in: Commenges, Alkhassim, Gottardo, Hejblum & Thiebaut (2018) .
How to cite:
Boris P Hejblum (2017). cytometree: Automated Cytometry Gating and Annotation. R package version 2.0.6, https://cran.r-project.org/web/packages/cytometree. Accessed 18 Oct. 2026.
Previous versions and publish date:
(2026-07-09 07:30), 1.0.0 (2017-06-26 01:01), 1.0.1 (2017-07-03 15:30), 1.1.1 (2017-10-22 18:26), 1.2.0 (2018-08-28 23:14), 1.3.0 (2019-01-12 14:10), 2.0.0 (2019-08-19 20:30), 2.0.2 (2019-12-04 23:20)
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